Installation instructions - Revision history

Wikiadmin: /* Build from source */

2024-02-02T07:25:38Z

‎Build from source

2023-11-04T09:07:06Z

‎Build from source

2023-11-04T09:05:21Z

‎Build from source

2023-11-04T09:01:13Z

‎Build from source

2023-11-02T09:41:38Z

‎Build from source

2023-11-02T09:41:02Z

‎Build from source

2022-04-18T09:32:34Z

‎Auto installer

2022-04-18T09:32:00Z

‎Auto installer

2022-04-18T09:31:36Z

‎Auto installer

2022-04-18T09:31:26Z

‎Auto installer

@@ Line 109: / Line 109: @@
 You can also check how to install AutoMeKin using Ubuntu:
-<code>https://colab.research.google.com/github/emartineznunez/AutoMeKin/blob/master/AutoMeKin.ipynb</code>
+<code>https://colab.research.google.com/github/emartineznunez/AutoMeKin/blob/main/AutoMeKin.ipynb</code>
 which involves the installation of the following dependencies (before the installation of AutoMeKin):

@@ Line 181: / Line 181: @@
 <code>autoreconf -i</code>
-<code>./configure</code>
+<code>./configure --prefix=path_to_program</code>
-This will install amk in <code>$HOME/amk-2021</code> by default. If you want to install it in a different directory, type:
+Where you can specify where you want to install it, e.g., <code>/opt/AutoMeKin</code>
 Finally, complete the installation:

@@ Line 169: / Line 169: @@
 Once the above packages are installed, you can now install AutoMeKin following these steps:.<br />
-Download the [[Media:amk-SOURCE-2021.tar.gz| tarball ]] from your terminal
+Clone AutoMeKin from GitHub:
-<code>curl -O https://rxnkin.usc.es/images/1/1a/amk-SOURCE-2021.tar.gz</code>
+<code>git clone https://github.com/emartineznunez/AutoMeKin.git</code>
-Untar and unzip the file:
+Go to the AutoMeKin folder.
-<code>tar xvfz Amk-SOURCE-2021.tar.gz</code>
+<code>cd AutoMeKin</code>
-go to the amk-SOURCE-2021 folder.
+Now type:
-<code>cd amk-SOURCE-2021</code>
+<code>autoreconf -i</code>
 <code>./configure</code>

← Older revision		Revision as of 09:01, 4 November 2023
Line 98:		Line 98:

	==Build from source==		==Build from source==
		+
		+	The most recent and up to date version is avaialable at:
		+
		+	<code>https://github.com/emartineznunez/AutoMeKin</code>

	You can build (system-wide) from source using this script (on a CentOS):		You can build (system-wide) from source using this script (on a CentOS):

@@ Line 105: / Line 105: @@
 You can also check how to install AutoMeKin using Ubuntu:
-https://colab.research.google.com/github/emartineznunez/AutoMeKin/blob/master/AutoMeKin.ipynb
+<code>https://colab.research.google.com/github/emartineznunez/AutoMeKin/blob/master/AutoMeKin.ipynb</code>
 which involves the installation of the following dependencies (before the installation of AutoMeKin):

← Older revision		Revision as of 09:41, 2 November 2023
Line 102:		Line 102:

	<code>curl -LJO https://raw.githubusercontent.com/emartineznunez/AutoMeKin/main/Build_Centos.sh</code>		<code>curl -LJO https://raw.githubusercontent.com/emartineznunez/AutoMeKin/main/Build_Centos.sh</code>
		+
		+	You can also check how to install AutoMeKin using Ubuntu:
		+
		+	https://colab.research.google.com/github/emartineznunez/AutoMeKin/blob/master/AutoMeKin.ipynb

	which involves the installation of the following dependencies (before the installation of AutoMeKin):		which involves the installation of the following dependencies (before the installation of AutoMeKin):

@@ Line 27: / Line 27: @@
 ==Auto installer==
-This is the easiest way to install/use AutoMeKin. The auto installer script installs singularity in your computer and downloads the last release container image from sylabs (https://cloud.sylabs.io/library/emartineznunez/default/automekin) as <code>$HOME/automekin_<tag>.sif</code>. Note that this is done only the first time you use it unless a new image is available. Then, the script will detect singularity and the image (that must be located in your <code>$HOME</code>) and will only start an instance of the container. The container includes amk-tools
+This is the easiest way to install/use AutoMeKin. The auto installer script installs singularity in your computer and downloads the last release container image from sylabs (https://cloud.sylabs.io/library/emartineznunez/default/automekin) as <code>$HOME/automekin_<tag>.sif</code>. Note that this is done only the first time you use it unless a new image is available. Then, the script will detect singularity and the image (that must be located in your <code>$HOME</code>) and will only start an instance of the container. The container includes [https://github.com/dgarayr/amk_tools '''amk-tools''']
 ) Download AutoMeKin's auto installer script Automekin.sh ('''Last update April 4, 2022''') from your terminal: